NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307278_10000548

Scaffold Ga0307278_10000548


Overview

Basic Information
Taxon OID3300028878 Open in IMG/M
Scaffold IDGa0307278_10000548 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19032
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056726Metagenome137Y
F076245Metagenome / Metatranscriptome118Y
F091344Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307278_1000054811F056726AGGMVTDAHRRRGRGSSVGYVIVLLGAAMFVTSCFLPYYGFPGGHSVSLYDQLLVAQDGGLELGAKLFLFGGVAAVVVVALVGLTRGERQSGRGFLAGAVSAWSLTWIGSLLQSAGLREGATIPGGLSLETGFWLQAVSIGAAVIGTILVVSKRTRAHEHGAPGIESRDGTGIGREDDGSTA
Ga0307278_1000054818F091344GAGGMTWALERAPNPRVIRVHTTVELTQATIEKCPPASPPEGLGSLLAVDGVRSVDLHRYRARLNLSPGCNAEAAWDGVARVMEAAWGAPGPLPSEPPPRGFEVAYEGPRIVAESPEMAASDATLAALFRVPGVAEAILEAGWVRVRPGRLFPWEDVEDSLRWALQST
Ga0307278_1000054823F076245GAGGMSSRKDGDTMNRLMRVTLLTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR

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