NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307289_10114963

Scaffold Ga0307289_10114963


Overview

Basic Information
Taxon OID3300028875 Open in IMG/M
Scaffold IDGa0307289_10114963 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1101
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000435Metagenome / Metatranscriptome1147Y
F009836Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0307289_101149632F009836AGGAGGMTVNLAYSIVPTTEICPNCKSEMAITRVIPILVNGFEDVTYRCKACPSEVQRTFKRQSGAWELITLPSSLALHPRAKRWRSGLSPRGA
Ga0307289_101149633F000435AGGAGMSDEFDGLDATEKPGTEAALNRCRALATKIGNELRNKRPEHFVDKLSLAEIHASLERAADVLTTVKGLPARGRQRR

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