NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247608_10000687

Scaffold Ga0247608_10000687


Overview

Basic Information
Taxon OID3300028805 Open in IMG/M
Scaffold IDGa0247608_10000687 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52616
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (31.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071326Metagenome / Metatranscriptome122Y
F072445Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0247608_1000068716F071326N/AMTNNEDMASKLLEKANKLYSIGMKNMALPMKLLGTDFVVLRPKDNSKWKNVFGGTYSSDSTLENDYDQFTTRLIINMNDMRDVWNRNRDTIESYSPDGSLRVGDELQYTRNKRTYRFKISMKQGFSEDADTLFIYTLSSIIETIDE
Ga0247608_1000068719F072445N/AMAQSVRELVRGSELHMKFIDYHESYWDDNKEFLRGDMWQFDFGIGGSGGPKIVYFPGNNLIHKRLNSVNLSMDTSVNGFEKRMRGNYVIRQQTGQSTNGQLTLSFIDKEDQAISYFVDDWKQKIADRDTKYSFRKEDVVCDCEMFITNSSRIDVRHLSFYNCIIMDAPLDENGADADGTDRSDVQLSMAFEHMEREFVNL
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