Scaffold Ga0247608_10000152

Overview

Basic Information

• Taxon OID: 3300028805
• Scaffold ID: Ga0247608_10000152
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133082
• Total Scaffold Genes: 254
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (66.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072829	Metagenome / Metatranscriptome	121	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247608_10000152179	F072829	GGAGG	MENLYDQLIDEYFKRHPDAGLAWWMLPVEEQPDGFKQEMYDIMWDLTHKENE
Ga0247608_1000015228	F087968	N/A	MILYTCPKGTERKESDMVKITKGMARKLYNEGEEVMIIPNRVRPDGMLASWTTKPADDPTADFDKLCNAIFYYNCSPETGMSLVYYAKAI