Scaffold Ga0307281_10018262

Overview

Basic Information

• Taxon OID: 3300028803
• Scaffold ID: Ga0307281_10018262
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2006
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307281_100182623	F013143	AGAAGG	MLSRFVLGAIVGGIAVWVWGEDLRRLANTKGRNARLVAADALQSVQSTAEDLFDTAKDQVTSKLQAGQDAVRPARIPRDRR
Ga0307281_100182624	F095084	GGAGG	MSGMPALYCRTCNDFREVEDWRERGEALVIALEPCGHEIRRRAGIEWPIHKVAA
Ga0307281_100182625	F051769	GGA	MNAYAASGRVAAAVVLAMGGLGLALRLLGGRRSTPLPVARCPIHGIAYDAELEVCPDCAKTDAAGGKGGAR