Scaffold Ga0265338_10046974

Overview

Basic Information

• Taxon OID: 3300028800
• Scaffold ID: Ga0265338_10046974
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3949
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F050243	Metagenome / Metatranscriptome	145	Y
F085928	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265338_100469742	F000262	N/A	MSDKRKKLERIYLTSMTILVTLATLSCSGQDFGFLQPTPGDLCKCVPLEPDIADYRHAAKHVPISNLVAQEVTVETILTWSQDLFIPPDAPRTGRELEVFHLANAFLQKASVNAVDCDVSMEISQTADKGSARMIVETPVDSEYCGARQNLQAQLKQHGFQLDSQHGGELPQALPVDIVGMAFEDFEHDRGPVATLWEIHPAIVTLH
Ga0265338_100469745	F050243	GAGG	MAKKVEATVLSTLQDLLIFQMASKGVPQRQIREAVGLEIGRVNRIAKLAKKSSKSEE
Ga0265338_100469746	F085928	AGGAG	MPTEGTERLIELLEKALMIQLHALGAAQGDIAKMLSKSKTDVNSFLKPIAKGKR