NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307287_10230166

Scaffold Ga0307287_10230166


Overview

Basic Information
Taxon OID3300028796 Open in IMG/M
Scaffold IDGa0307287_10230166 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011645Metagenome288Y
F091478Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307287_102301661F091478AGGAGMAACDVLYFDPAHAGQVRRDPAGLPLGPPGDGWRPCPAHGNVWTDPELVLRFICTDHRRQVAALHAAGLASRVRWNRPGLPVAPAPSASGGEGP
Ga0307287_102301662F011645AGGAGGMARVTIHIGGRDRLEPAISKATPMGLLGTDAIVHVGQLIITGSATAMRALADALIEAAEMAEAYDADPDAFNQRQQAELLDPEEPS

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