NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307287_10008069

Scaffold Ga0307287_10008069


Overview

Basic Information
Taxon OID3300028796 Open in IMG/M
Scaffold IDGa0307287_10008069 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3481
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036581Metagenome169Y
F047542Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0307287_100080692F036581N/AMGCLRLLFFQLWKVLLAALIALVFTRVDSHVETRYPDSAAGKAWRAYRNRGKKKAT
Ga0307287_100080696F047542AGGGGGMNKTIKGLAFAAMLALSLVASTSGALAKDAKAGRETAWTDLGPLPIPQGVTWETAPLEPVGVTWEQ

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