Scaffold Ga0307504_10023016

Overview

Basic Information

• Taxon OID: 3300028792
• Scaffold ID: Ga0307504_10023016
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012151	Metagenome / Metatranscriptome	283	Y
F017571	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307504_100230161	F012151	N/A	TTGDFNVVTFTHGNTVIGRIDSLSANSRFPIGGAWRLGPRFTIDRLNTGTDGSQENTYIPSLLLDYQRDRKLFQLEFGGQLGKREAFLQLQNGAFVQTQNTTRYYVSVSYRISFQ
Ga0307504_100230162	F017571	N/A	VSAKSGDKGRVALPVAVLLALATCTALAGDKQPQEYLDEETAATITVVGEPLVFACPRPELAANVRDYVTLAAAAVNRNGKVSYVLIAYFWSTVDPRLRRDAMPSPEPLVLQADDRRIELKLRGHSAHEAGIGAPVHAPPGAAVTPNVYGTDLATLRFVSEAHRLTIVADSDGAPLPYELWEDRRTALRNFVHHMNGDE