Scaffold Ga0307290_10003403

Overview

Basic Information

• Taxon OID: 3300028791
• Scaffold ID: Ga0307290_10003403
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5123
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021546	Metagenome	218	Y
F088400	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307290_100034031	F088400	GGAG	VRTLSSLRRRKIVTESGRTLGRCHDLRAELGASSLRVTGLVLGRRGRLEHFGIGAQASASSVRVRDTDVIPWEHVVRFEEDRIVVT
Ga0307290_100034034	F021546	GGAG	VRRFGLLLLLVPLLAACNGGTVDLHALTNDSAAIDSLACEGALLANQVAHDASTSAFTRVHAGELAQRASNFEDALSQRPTTPGIEKAVRDEAAKAGKIAGLLGELEADPTDSQRAAELKGRLEQAGGCA