NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302189_10106584

Scaffold Ga0302189_10106584


Overview

Basic Information
Taxon OID3300028788 Open in IMG/M
Scaffold IDGa0302189_10106584 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1260
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038518Metagenome165N
F080768Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0302189_101065841F080768GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGN
Ga0302189_101065844F038518N/AREGKIDANWWDAAMRFGMLDPGEETVYRLGSYPVKVMRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ

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