Scaffold Ga0307517_10011480

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10011480
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12273
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005406	Metagenome	401	Y
F006830	Metagenome	363	Y
F040409	Metagenome	161	Y
F067352	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_1001148013	F006830	N/A	MNTTLEKLKKYFPALPPNAIAKIYRARCARLRLLMNHGIPEDIRW
Ga0307517_100114804	F040409	AGG	MLKMFISNVMFTNDSFISPFLQLINALEVARNGCPKITGNELHASTGYVCKTIKSTG
Ga0307517_100114806	F067352	N/A	MPVLKISIYHKLKLFYIIRFVIIKHALVREFNDTLVQYEDIKP
Ga0307517_100114809	F005406	AGAAG	MDQVKLVISLRSGKVIEKPIIEPCEKDDELISEGKEVVEYEHCKEKTDSPPALLFSHVMTKQRKVNHNSDIFETFKQVRINIPLLDAIK