Scaffold Ga0302225_10113581

Overview

Basic Information

• Taxon OID: 3300028780
• Scaffold ID: Ga0302225_10113581
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1320
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001776	Metagenome / Metatranscriptome	636	Y
F017190	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302225_101135811	F017190	AGGAG	VSGSHAGMSLAALRLIREEPGQVLRLARFRQHHPDVIIGAGEFGTWEARIPEPAGETVTTRCKLRDLLDRL
Ga0302225_101135812	F001776	AGGAGG	VRFREDRPEDLDRARAAVADWRDRNPAGTCEELLAAIGHQFHQDYAVVLRAVLFTVDRHRARQVTGIPAEETRP