NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307320_10273451

Scaffold Ga0307320_10273451


Overview

Basic Information
Taxon OID3300028771 Open in IMG/M
Scaffold IDGa0307320_10273451 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)668
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005471Metagenome399Y
F091478Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307320_102734512F091478AGGAMAGCDVLYFDPTQVGQARRDPAGHPLGPASDGWQPCTAPGQAWTDPDLVLRWICTRHRRQLTALHAAGLAAQVRWRRPSLSTHPAQAREATP
Ga0307320_102734513F005471N/AGHRMHPQPYPTHNHPEPALHLLGGIWIASCPTCGWQLTTARTQVRCERRAARRRCPVCHQDGS

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