Scaffold Ga0302198_10002110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302198_10002110

Scaffold Ga0302198_10002110

Overview

Basic Information
Taxon OID	3300028765 Open in IMG/M
Scaffold ID	Ga0302198_10002110 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21109
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019380	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302198_1000211014	F019380	N/A	MRLIVGIVLALMLTTHVASAEQHCRKADIDRSSGFCTVPDPALTPGEMDASLACISNVDRSRRVTETEKKAILAAYGLPAGTDKSTGEFDHWLPHWMGGSDTERNIWFEPHAGKFGSFTKDKVELLLYRRVCVNKTMTLEQAKKLYLTGWTQLVPKQ

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