NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272447_1007870

Scaffold Ga0272447_1007870


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1007870 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3447
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098169Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10078704F098169N/AQNPSVQESIYRSVVRQYEKTVPTDVGPVWFMQNYLAHGYPEAEALLVRLATEPSDRNVRFAAIYTIATSMEPRVPRLLREVADKAHDEWTARTAIDYLATYLEVAMENLVGEGITPTRDEVLDALGVLGLAMQGEWFRPEGEIRHILTALNYNRSEFERAAQGQIPARVEKQVIDGLMSILSLGSLSDDECEKVLNVIKEWGSDYALSKLRSYLRGAISLLRGVISQRRRQMVIDAINEIEHQLKHKSG
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