NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302156_10119313

Scaffold Ga0302156_10119313


Overview

Basic Information
Taxon OID3300028748 Open in IMG/M
Scaffold IDGa0302156_10119313 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1314
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F012316Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0302156_101193131F009261AGGAGGMILTPSNTGNLVAGAGLGIFAWSAFLKADKIPWLKNLLTTRCKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTLLNIFMLWAYLPFRKMRTKQK
Ga0302156_101193132F005296GGAGMAPWLLWFLPSFEAGFWSALIAGKLRDRGKTRELLVYGSRSRTSLPLIDERLRRAAGTPTKSQAFAARRIAAGLRWLANTRAMEYAILLGLKRVWPKGQTISTEVKMCL
Ga0302156_101193133F012316GAGGMSTTIIDQSTGPMHRCGKVWEGLRSLRTRGISTVNLWRRHQDQNALERSLARIIETANGHRAKGLPKGSPAYIVLRETADAKIQVFSTKWSVDVAAVKAQAPALADLDSLCVPDTQIPAGLKLLAALFGTILSLVLLGAASGLVHVGHDWVMRFAGR

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