Scaffold Ga0302267_10003835

Overview

Basic Information

• Taxon OID: 3300028745
• Scaffold ID: Ga0302267_10003835
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16996
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034040	Metagenome	175	Y
F036529	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302267_100038353	F034040	N/A	MKMKTQPEAPYTDPEALLQARVLKILKPCRGYWLDEQTLYLTLNLSRPAVTRERLDFALRELRDKAYIDFRVDPLSRLTEWRLTPSGNTLAQPL
Ga0302267_100038354	F036529	N/A	MPLPFTLYLLPFALVLAQEVPAPDTARLSSWLIDAAALAAILLVFLKVLDHFKRRPSLEQELEKLLRQIRSELNQIRVEHAEHLAEVRLRVEGAHQRVDHLTHDLNNKLQRLPGEIVDILHKTGVLKGKG