NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307318_10032751

Scaffold Ga0307318_10032751


Overview

Basic Information
Taxon OID3300028744 Open in IMG/M
Scaffold IDGa0307318_10032751 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000938Metagenome827Y
F044957Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0307318_100327513F000938AGGAGVARRPIWLIDLGDGTWAVSCMACRIALYRGPKAGADRAARGHACEPVIPLGRRRRPA
Ga0307318_100327515F044957AGGTGGMNRRIVFYLDPGLGWTKPLFLAGCGDCGTELARSTDQTTAERTAARTRCPSCGSRTARRLPGTTSPASDLAVAAGRRRSAARQPIRRLRAAQRR

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