Scaffold Ga0302220_10135720

Overview

Basic Information

• Taxon OID: 3300028742
• Scaffold ID: Ga0302220_10135720
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 945
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007671	Metagenome / Metatranscriptome	347	Y
F096550	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302220_101357202	F007671	AGTAG	VTAPTLVGLGYTEDDLRRLQEMAGGARLEAPQDLRHVIDNYAYLDDWRANYRIQSVRSSLQSSRITCIDAAILSYGLLELLFSGTKRRLLAIHRRDPKVDEECGHCVTLYWGADGRVGSFSKSSFKGLGHRDAVFADETAIATSYAEAYVEMGFEPLYFGVSTLEAAAPDLDWRFHEGDLNEISARLQATYEFGFMVE
Ga0302220_101357203	F096550	N/A	EVNDALNVAKNMAEHLVLFMDGIDTFYANFATVPRRRCDPQSE