Scaffold Ga0302301_1000001

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000001
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 668714
• Total Scaffold Genes: 610
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 456 (74.75%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Associated Families: 20

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F000477	Metagenome / Metatranscriptome	1097	Y
F001589	Metagenome / Metatranscriptome	667	Y
F001867	Metagenome / Metatranscriptome	624	Y
F002012	Metagenome / Metatranscriptome	604	Y
F006807	Metagenome / Metatranscriptome	364	Y
F007233	Metagenome / Metatranscriptome	355	Y
F011955	Metagenome / Metatranscriptome	285	Y
F012243	Metagenome / Metatranscriptome	282	Y
F016839	Metagenome / Metatranscriptome	244	Y
F026629	Metagenome	197	Y
F028236	Metagenome / Metatranscriptome	192	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F037877	Metagenome / Metatranscriptome	167	Y
F044617	Metagenome / Metatranscriptome	154	N
F065986	Metagenome	127	N
F082246	Metagenome / Metatranscriptome	113	Y
F084998	Metagenome / Metatranscriptome	111	Y
F085937	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_1000001158	F002012	GAG	MALASTTRLIAGCVRSKFAALSVYALMHIPSAVLAAVMLLQRHSSRRSDVYNILWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLIVLISIFLLGWELLNVFHIFPIKLRR
Ga0302301_1000001230	F000410	AGG	MSRKLVWIEQPRFRGFGCSECAWVFNPSGAPSGKSFDEMTRNYESLRDKEFRLHVCADHPGAKGTSGKT
Ga0302301_1000001233	F000477	GGAG	MPATKKFTPEIDAKLYKEFVAVAKRNGQSQRHILEEALKFYLKNVVPSQHLVRPDVMDAFEQSVASNRDLLERLAK
Ga0302301_1000001250	F001589	N/A	MRNPTIALTLAAFLLFPSCSPRDFLTRRLAADLIAASDTFSAPQPFQLGTGIVSNRDHLSPEYIVLQHRGWIAAATASCPPALAPPPCWDVTLTPSGVDTFQNLISPGDAGKPAFTISAARRELVAITGIAKQGNTADVDFTWRWIPLNEVGAALYPSDLRYYSTASFRCYDDGWRLVDRVSHPAESLDDELKNAQPAR
Ga0302301_1000001269	F011955	GAGG	MTTPTPASDHPSLRITPVTLAENDLSEIASFIAAQSGRTHESVERHLRWFLLENPARRPEDALGLGLRAADQLVGCILCVPQAFRAGTKTILLMGSSSFYVDHRHRGHGGRIFLKYSRLANQYPLFGTSANAEAAALWKAAGARPIPDSDAELFGVLRWPPVAEEFIHRKYANQLLSRLAGSPIANAARLILHLKIDDGESDALQPLTSAEQVNDLPIHNSSAKLTAMRDLLYIRWRYFSGKDATVSAFAFRSRGPDQDLLVTVNQRTRGYRGQINTLNVLDVYPEVSPEEWLRIIRALIARYDHNVDAIVVRFQNPDQLKLLCEKGFQRRAFDAPTGWFLDRTKLMPTHELYFVPADGDGLI
Ga0302301_1000001283	F026629	GGTGG	VNRMRVLLIDPLDSADAGPWASQQWDRIVDLGMGGNKTYERWNRHFRSAVTTLDSLRDGFDDFRRVRRLMDLGCGRLMDQHGLDWWEIMSILLHGELETLILLQRLAHTLGSDDEVHVTRPGLHASLLQALLPARVKVFPVRRAARKGGLGHYVRISKKLSASQIVDVFWDKYDAGYQLRGRLLRKRAPSARPVVLLPTAYVNVSRTGIAYANTFPGEDFLLVSTRKSGWVENPPKNVATAWLSSYASLQDRGDENKEMGRRWQSLLNDLTGTAEFDILHRLGYLDSFPRRFQHGFEVRDAWRNVLDTEPVHALLCADDSNPYTRIPLLLAQARGLPNIACHHGALDGRYIFKRSYGEIIWAKGKMEKDYLERVCGVPQQIVEIAAPAPPANWTTLEASKPDGFQPYLLFFSEACDVSGGGRQEEFYGDILPPLADLALSTGRELIVKLHPAESERERAGIISRILSPAQKAVTRVVSGPLTEDLLAKAWFGITILSTVAFECAVRGIPCFLCKWLEFWPYGYVEQFIRFGVGMGLNDPAEIQRIPDLLKQYVPSAEVREKCWSPAAPGRLRELVAASRKPRAVVAS
Ga0302301_1000001338	F016839	GGAGG	MFSIIFTWVIVAWGAIACIYMLRCAWTRFPKRDVDADDVIPFLYPVDISLAESLLDPATEFECRWRLEPRRFRKAQRKRMRLYLELTRRMAHNARVLVEYAEAEKNSCDPRRMSVAAAVQEKAIGVRLYSLLTGIKLRFWLLLRTDILNSKPVMAHLRTTGDIDGLETYGALKTAAAAAFMKLPPDAIDSLTRNL
Ga0302301_1000001339	F012243	N/A	MSLIVWYIPLALLVLLLGVLLRRRAYGVSPCFFSYVAFGVAAGVARFVVRHHASAYYGTYWITEAGYDLLGILVMYEVLRTVLGSLTRAWWARLIFPAVLVMGFSLSLARSHEVPHRLVGILFNIVLGETAVRFVQVLVFAGLVTLVPLLGLRWRQYSFGVATGFGLYATVMLLATTKYSDFGTRFKFLWDVTSLVAYSLAVLIWIWFFSVPQKAQTPSSELSAPSPGDLKQYKDALRRM
Ga0302301_100000143	F082246	N/A	MGRVSEMPGPLYKQQGRASFLDKNATRFGEFDGSSLVASKEVKSVLFFEVRNLPAQSRLAYIQSESSSREIQFLSEDIDREKVADFNVGEHCSKPRLRV
Ga0302301_1000001466	F001867	GAGG	VAKNSSDQLWFQRYIEFHCDDCGSDTGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLIFMPVKERLSEVAAKPAVSAVRPGNTRNVA
Ga0302301_100000150	F044617	AGGA	MSTSPKPSRQTPKVTAITADERKKLDERIRDKHQKLRNKYPEVYGKVVDWIHHSVEDGTLYISIRFQDKTDFALEFSPQIVRVGTELCDSATDDFDVIRNYYQEQRE
Ga0302301_100000151	F065986	GGA	MSNIAKRQGRMIRKGTEVRYGSVHIELIGPIELLHNREAKGAAIDFLRTEILASKDCARISPSLKRFRLVSIRT
Ga0302301_100000152	F037842	AGGAGG	LKEKTVKARGEGVEYPALIGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSTDPELSTVRGGNIVRWRELKTRPVMRRVARK
Ga0302301_100000153	F033134	AGGA	MKQEQESKQLITFNSLHIEVLGPKELGNSQLAIRGVTEFLHAIELDVRNLLRERAETSPILEGFRLRFG
Ga0302301_100000154	F007233	GGAG	MANRKQKEQKRQLNQDTFSDGIKGRVLEAISISNELECRYISLEFDDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0302301_1000001540	F028236	GAG	MESPTTVIIIPFNHCVVVVGLLHCAEFSSRLSEVAQALDSISGIQFLAGSRRLGERWLPGTI
Ga0302301_1000001582	F084998	N/A	MAKAAPKSKTAMDTLVDSFSDLVADAKKRMSPEEFRRAEKEFDQIVDKARARASRAGRRETA
Ga0302301_1000001583	F085937	AGGA	MAGRWKPPKEQRTDAEAVRRKKGLAEKLAFAVEFGTEEEFVDAVKKFKPDVGKDELKAWIMRFRDARREKRGL
Ga0302301_100000185	F006807	AGGAGG	MRRIIVAVALLSTLILFGCKTQIACDPADSEAVCKAFQQCLHSDTSAEVCRMGEQDANKLEKNKKH
Ga0302301_100000193	F037877	AGGA	VLNICSGFVGGSVQVGYNLGRAEQSVQMDLHMAQVQGKAEIWWRFGGGSDRNRALLGNKGNSMHGMQIAQGRINAGDFASR