NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257115_1156315

Scaffold Ga0257115_1156315


Overview

Basic Information
Taxon OID3300028706 Open in IMG/M
Scaffold IDGa0257115_1156315 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033048Metagenome / Metatranscriptome178Y
F058066Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0257115_11563151F033048N/AMIDKTIKLAGEYPSDFKPTPTVLEIHQYFNAHSFHNGRMIGGSKSVYRNMHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVL
Ga0257115_11563152F058066N/ANDGNPTDEASRLATQRWDNVLNEILYGLKCAKKLQDMDYDYKDKEEVKKLTQSSRRSFELIGKHLFNLWD

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