NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307276_10013437

Scaffold Ga0307276_10013437


Overview

Basic Information
Taxon OID3300028705 Open in IMG/M
Scaffold IDGa0307276_10013437 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1504
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016670Metagenome / Metatranscriptome245Y
F094554Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307276_100134372F016670AGGAGMATERTTERAPRRGQLEFPPMQRHSRNFELLMIGICIACIIVAVVIAKATEWGVTTRP
Ga0307276_100134373F094554AGGAGGMALGWDTTPPCIQHGVAPADGVYKPFEKCNDFFTMGPGSTFGTATDGVSTSYWILTIVGIIVMIAAFVAWVTTEDRKLKQQAARLLLTGHAGQVHIKDPHTPSPGLGGPSDLGDV

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