Scaffold Ga0302171_10040303

Overview

Basic Information

• Taxon OID: 3300028651
• Scaffold ID: Ga0302171_10040303
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1155
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y
F012089	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302171_100403031	F012089	N/A	SKQRASKPVEVWISDLYEKDGRLLIRYTVCNHGTEPYTIDTPLVYQLDGVRSAQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPGSKQSEDGLSNGQQMQIAAFLVR
Ga0302171_100403032	F010341	GAGG	MAVPFTVKPVYNAMSQYIRNRTDIGAGRAMRDGVLEPSNPFERQAARPPRRWFVLLSLLAAMVFGFFVYFNNLL
Ga0302171_100403033	F004753	AGG	MNDQNHANEVKPPAPTELCSDAREQIRDWEFLFWAFLLFGLGRLAWLYLYQPENKGFHLGLSCGFVFCGVLGFLMRWVFSPRRK