Basic Information | |
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Taxon OID | 3300028648 Open in IMG/M |
Scaffold ID | Ga0268299_1000001 Open in IMG/M |
Source Dataset Name | Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2680031 |
Total Scaffold Genes | 2600 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1837 (70.65%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems |
Source Dataset Sampling Location | ||||||||
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Location Name | Netherlands: Nijmegen, Gelderland | |||||||
Coordinates | Lat. (o) | 51.82 | Long. (o) | 5.87 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020202 | Metagenome / Metatranscriptome | 225 | Y |
F024580 | Metagenome / Metatranscriptome | 205 | Y |
F031386 | Metagenome / Metatranscriptome | 182 | Y |
F033105 | Metagenome / Metatranscriptome | 178 | Y |
F040517 | Metagenome | 161 | Y |
F044351 | Metagenome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0268299_10000011042 | F033105 | GAG | MAHHSRPAAGAAGHSWATQMEPRRTIPEPTYHWPGGPGADDDPTPLESALAALKLGAIAAAAATILYYYLAVYRGLVVGRLAMTSSVLAAFVLPSLLAFLRTRWARRRRAGGRPGGGNP |
Ga0268299_10000011169 | F020202 | AGGA | VSRDPGRDLPILTDVVELHATGSFPQAEPAPAEPASPYAAGLLTPEDIAALQAALVSRTMNLTDELLHAAARDIEAVMFERVIDRLRAALPELVAAALREHLAAGEE |
Ga0268299_10000011518 | F040517 | N/A | MAERDKPNKLPDDAEGIAHYAEQQRLGHGRIEFDELGNAVWVPNSGARGDDVMRRLLDDPTLAFSNEYTPGTVRKIQENPLGVKKGYDPYDSGQLVKKDRNRKKDLRRLSDWIKTQKPKD |
Ga0268299_10000011771 | F044351 | N/A | MPSPDSAAVSHDGDIVRIQGRAVRMDFMVREAFWAGDRAVVLLDPTAYLDDPTYGAQRRRSRDPIHNLRAYAPSGKILWQAEQPEFEDHYYRIESREPLVALSFSGHRCDLDLASGKILKQARLK |
Ga0268299_10000012185 | F024580 | AGGAG | MTTLYTRYTRTIAAALASVVIVGLTGLTLDRGHEGALPKGTIEVGEPQALAIGDLVVATLPAVEVIGSRDVMLADTDANDAGSQG |
Ga0268299_10000012458 | F031386 | GGAGG | MTPNVRDQRRRALGAPLADRNLSASEHVHASGVPTRDDRCIA |
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