Scaffold Ga0268299

Basic Information
Taxon OID	3300028648 Open in IMG/M
Scaffold ID	Ga0268299_1000001 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028648 Open in IMG/M

Scaffold ID

Ga0268299_1000001 Open in IMG/M

Source Dataset Name

Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2680031
Total Scaffold Genes	2600 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1837 (70.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2680031

Total Scaffold Genes

2600 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1837 (70.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems

Source Dataset Ecosystem

Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems

Source Dataset Sampling Location
Location Name	Netherlands: Nijmegen, Gelderland
Coordinates	Lat. (^o)	51.82	Long. (^o)	5.87	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netherlands: Nijmegen, Gelderland

Coordinates

Lat. (^o)

51.82

Long. (^o)

5.87

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020202	Metagenome / Metatranscriptome	225	Y
F024580	Metagenome / Metatranscriptome	205	Y
F031386	Metagenome / Metatranscriptome	182	Y
F033105	Metagenome / Metatranscriptome	178	Y
F040517	Metagenome	161	Y
F044351	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268299_10000011042	F033105	GAG	MAHHSRPAAGAAGHSWATQMEPRRTIPEPTYHWPGGPGADDDPTPLESALAALKLGAIAAAAATILYYYLAVYRGLVVGRLAMTSSVLAAFVLPSLLAFLRTRWARRRRAGGRPGGGNP
Ga0268299_10000011169	F020202	AGGA	VSRDPGRDLPILTDVVELHATGSFPQAEPAPAEPASPYAAGLLTPEDIAALQAALVSRTMNLTDELLHAAARDIEAVMFERVIDRLRAALPELVAAALREHLAAGEE
Ga0268299_10000011518	F040517	N/A	MAERDKPNKLPDDAEGIAHYAEQQRLGHGRIEFDELGNAVWVPNSGARGDDVMRRLLDDPTLAFSNEYTPGTVRKIQENPLGVKKGYDPYDSGQLVKKDRNRKKDLRRLSDWIKTQKPKD
Ga0268299_10000011771	F044351	N/A	MPSPDSAAVSHDGDIVRIQGRAVRMDFMVREAFWAGDRAVVLLDPTAYLDDPTYGAQRRRSRDPIHNLRAYAPSGKILWQAEQPEFEDHYYRIESREPLVALSFSGHRCDLDLASGKILKQARLK
Ga0268299_10000012185	F024580	AGGAG	MTTLYTRYTRTIAAALASVVIVGLTGLTLDRGHEGALPKGTIEVGEPQALAIGDLVVATLPAVEVIGSRDVMLADTDANDAGSQG
Ga0268299_10000012458	F031386	GGAGG	MTPNVRDQRRRALGAPLADRNLSASEHVHASGVPTRDDRCIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0268299_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences