NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268299_1000001

Scaffold Ga0268299_1000001


Overview

Basic Information
Taxon OID3300028648 Open in IMG/M
Scaffold IDGa0268299_1000001 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2680031
Total Scaffold Genes2600 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1837 (70.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems

Source Dataset Sampling Location
Location NameNetherlands: Nijmegen, Gelderland
CoordinatesLat. (o)51.82Long. (o)5.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020202Metagenome / Metatranscriptome225Y
F024580Metagenome / Metatranscriptome205Y
F031386Metagenome / Metatranscriptome182Y
F033105Metagenome / Metatranscriptome178Y
F040517Metagenome161Y
F044351Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0268299_10000011042F033105GAGMAHHSRPAAGAAGHSWATQMEPRRTIPEPTYHWPGGPGADDDPTPLESALAALKLGAIAAAAATILYYYLAVYRGLVVGRLAMTSSVLAAFVLPSLLAFLRTRWARRRRAGGRPGGGNP
Ga0268299_10000011169F020202AGGAVSRDPGRDLPILTDVVELHATGSFPQAEPAPAEPASPYAAGLLTPEDIAALQAALVSRTMNLTDELLHAAARDIEAVMFERVIDRLRAALPELVAAALREHLAAGEE
Ga0268299_10000011518F040517N/AMAERDKPNKLPDDAEGIAHYAEQQRLGHGRIEFDELGNAVWVPNSGARGDDVMRRLLDDPTLAFSNEYTPGTVRKIQENPLGVKKGYDPYDSGQLVKKDRNRKKDLRRLSDWIKTQKPKD
Ga0268299_10000011771F044351N/AMPSPDSAAVSHDGDIVRIQGRAVRMDFMVREAFWAGDRAVVLLDPTAYLDDPTYGAQRRRSRDPIHNLRAYAPSGKILWQAEQPEFEDHYYRIESREPLVALSFSGHRCDLDLASGKILKQARLK
Ga0268299_10000012185F024580AGGAGMTTLYTRYTRTIAAALASVVIVGLTGLTLDRGHEGALPKGTIEVGEPQALAIGDLVVATLPAVEVIGSRDVMLADTDANDAGSQG
Ga0268299_10000012458F031386GGAGGMTPNVRDQRRRALGAPLADRNLSASEHVHASGVPTRDDRCIA

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