NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302249_1032863

Scaffold Ga0302249_1032863


Overview

Basic Information
Taxon OID3300028628 Open in IMG/M
Scaffold IDGa0302249_1032863 Open in IMG/M
Source Dataset NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Val
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029768Metagenome / Metatranscriptome187N
F073597Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0302249_10328631F029768AGGAGMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGI
Ga0302249_10328632F073597AGGLPFSRRQALTKRGGMETGCFLLQGNQFVAGGNKFVLKRRKKPTPNKPELFLIQLQPFKYISSLFPAGEEGLYTFDYERQLYILKKGEAQVVIAEEE

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