Scaffold Ga0302243_1010914

Overview

Basic Information

• Taxon OID: 3300028627
• Scaffold ID: Ga0302243_1010914
• Source Dataset Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Met
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3163
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036594	Metagenome / Metatranscriptome	169	N
F061655	Metagenome / Metatranscriptome	131	Y
F069750	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302243_10109141	F036594	N/A	NYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNIEPEEPFSCYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLAEMRERQLETGNLPPTMRFEHRLLNKQKVQSVYGLSRVEDIFRGGYQVIREKQVESWKNSLFNFTAEEVVLLGSRQLEQEMRVFKEKFPSNWFSKFLKAYGAYYLASYAGKEVVIEALQAFEADRMKLWRAVQVFEEAEKELLVLKQEEGSSKTLGVLYEELRRKVCLN
Ga0302243_10109144	F069750	GGAG	MIITGEFPLQENSFFVEGAKYLIRERKQARGKKPQYYLVKLEPFQYVSSLFPTGEGESYTFDFEQKLYRLERKEHSVTLRLV
Ga0302243_10109147	F061655	AGGAG	MIDTLKVMLNEYEITDDSEVRIQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISR