NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302246_1000621

Scaffold Ga0302246_1000621


Overview

Basic Information
Taxon OID3300028624 Open in IMG/M
Scaffold IDGa0302246_1000621 Open in IMG/M
Source Dataset NameEnriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30097
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (77.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058970Metagenome / Metatranscriptome134N
F078673Metagenome / Metatranscriptome116Y
F080092Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0302246_100062112F058970AGGMIVTDAGLAYFAKFFNDQETTAIINKIRIGSSQTAEAASQTDLVTKYTDLGFQEATASTIEYADGKLHLQKVFTNGATVDREVWEVGAFTSAGDCICRHVYLPYEVANNNTVSPGQTITIDIYIELIPDDDITYTLTESGSPTTHEYLLEGKIVVSATVGGDPIDPSSYTCERGKICFNGIVLPNAAPPVVTESRGGKIWKIRCATQDYTTVSRLITKQGLVNVGVSVTGYQYATSLQRYGTLKIWDKTNQTHTSYNNCLISGPVNVETFGLWYLFDLTIIQSYYGDL
Ga0302246_100062142F080092N/AMKYIAAVFAALLFVLIICSLPSHAVISSTMYSNGGSVIVNTDESWETSNNLLRFGTVNDSYQYGGKSQTIVSLGRTGIQKTESTRVETLGMLNAFDSAGMFATQTNIPESICDQSNFIAGYGGNNSDSRYPETQTVEGLWGLMGSGPGTTYESQIEVVGTVVGVSVQGTSPQGYLYEDVKGSLKAGLDKNSSALQYSYSRHDHGLLTSDENKSLDGGFDWLWDTNADKIVSANESVTNETEEGE
Ga0302246_100062148F078673AGGMKIDVDTQCIIARENGEQVVVDDVSSIAIIIEFMGQKYNIFRTIDELILNGRWK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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