NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265293_10003930

Scaffold Ga0265293_10003930


Overview

Basic Information
Taxon OID3300028603 Open in IMG/M
Scaffold IDGa0265293_10003930 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26929
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058636Metagenome / Metatranscriptome134Y
F065565Metagenome / Metatranscriptome127N
F075994Metagenome / Metatranscriptome118N
F081238Metagenome / Metatranscriptome114Y
F086520Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0265293_1000393010F075994GGAGGMKLPKARITLDLEHELLEWIMRKVEKTGSSRNGVIGEIIQKAMEGEENEKKLDKR
Ga0265293_1000393030F086520AGGTGGMVKSRRDVVFEQSERIAIEVEIGRKAEERLRRRRYTPMTKAQFRYWVMRDLGLLEGYYDDFE
Ga0265293_100039304F058636AGGAGGMRKVALIILLIVLLSLPVYAEIGGYVSVEYDTLNQDWLWVLNVDKQLTPWFKVGTTLGTYCEGFGFKHFVPSWIPHRLDYEVYAEVHYKNLSLRVTDWCDHWFAQSDQDWLADRWGLTVRLRYDF
Ga0265293_1000393051F081238AGGAGGMQRMAAKPFYADYVNRLMRWYCRAMKEGEEVNLESALDRENWEAVAKVMERLHEENKRAIMEVYCKRDTLVDNVYLTALELGWKPDSLWALVGRVTRRVAEERGLV
Ga0265293_100039308F065565AGGAGGMSFLKVLNILVTAAGFIIPLALLLEAEELPGEEKKKAVLAQLKAQLDSVGLKFPEWLQKFIDPILGLLIDAVVFWLNKTGFFEHGGESSED
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Institute for Fundamental Biomedical Research
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