NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265294_10068095

Scaffold Ga0265294_10068095


Overview

Basic Information
Taxon OID3300028602 Open in IMG/M
Scaffold IDGa0265294_10068095 Open in IMG/M
Source Dataset NameGroundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3029
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055749Metagenome / Metatranscriptome138N
F095523Metagenome / Metatranscriptome105N
F103315Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0265294_100680953F103315AGGGGGVITVEIYLFLAAVVAGAFIYIFLDLDNRLYGNLFAAGFGGILSALLALWSFNENTVSLSAVPGASVTVEHYINETLQNVTTTHTYLTHAAPIVDPALGYFWVLVAVFMAFLFGYFIFEIVQESRQPDDEEAYE
Ga0265294_100680955F055749GAGGLAKDNNPMNLIIAIAIGILTLIAVFAVVPVVGGSIDNAMPTLSETSSWNSTYNPDLPDGASIWEQLGPLLVLAVLALVIGLVIMYFKNSAR
Ga0265294_100680957F095523AGGAGGMGASIPIEYLYLAVGLLLVAVVYIVNERNNIRLYNPEGPLFIAARKRELPLLRIIDPGTNHARYIIGEKDRDDDPVYAKDMYGLHADPAYVEGDASPERHLGGLLVYNISPNVTFPVSPRNALAQQTILRHRRDLTEFEDLDFLSGRDLLVLLGSPADHIKHDAGIFIDSYKPTVVTVDDEGRPVEIEMSADNLVNLITAFKGYVTALPIEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSALADKLWTYGLIGMGLLGTVGVVIYIISMTAK
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