Scaffold Ga0265309_10817841

Overview

Basic Information

• Taxon OID: 3300028599
• Scaffold ID: Ga0265309_10817841
• Source Dataset Name: Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 637
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1817
  • Long. (^o): 7.9018
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N
F090428	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265309_108178411	F090428	N/A	MSKKLITDELINERLEAKGFGEKQINDEDLAKEAVLKHFGVEFTEDYSSDADFFIYEES
Ga0265309_108178412	F003647	N/A	MAMCEWTLADIKNRASNKAFAKVTILTLDVETYKEDLRTGNIGGVTYEEFEQVLEGYKKELQVWNYITELIEKQ
Ga0265309_108178413	F005817	N/A	LSRLKPEFKKGLEDNKLRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRDSFNWRYGEDVFELENNVA