Basic Information | |
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Taxon OID | 3300028592 Open in IMG/M |
Scaffold ID | Ga0247822_10805268 Open in IMG/M |
Source Dataset Name | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 766 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.673 | Long. (o) | -77.032 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000280 | Metagenome / Metatranscriptome | 1383 | Y |
F001935 | Metagenome / Metatranscriptome | 615 | Y |
F065748 | Metagenome / Metatranscriptome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247822_108052681 | F065748 | N/A | RIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDYRLHCYTTWDTPEQLEAFLERGYTFERMLADVAGLQADPTLVMEKVF |
Ga0247822_108052682 | F000280 | AGAAGG | MEEPQQPQRPARPLVGYRDVGEDVRHSHSAMTRAWLILAVLMALYLGWTLVVYFLEPGLR |
Ga0247822_108052683 | F001935 | N/A | VYVRHVTSLQFLTYLSFFAVLLAAMFRFVPGRTPPTRDEPYSDEELHAHDRKAAKYFLAGGFFLVLGSLHMVLKNLPWVSEYLARTGDAGHLVRDLSNTHLM |
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