Scaffold Ga0247822_10805268

Overview

Basic Information

• Taxon OID: 3300028592
• Scaffold ID: Ga0247822_10805268
• Source Dataset Name: Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 766
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.673
  • Long. (^o): -77.032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247822_108052681	F065748	N/A	RIPAEQWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDYRLHCYTTWDTPEQLEAFLERGYTFERMLADVAGLQADPTLVMEKVF
Ga0247822_108052682	F000280	AGAAGG	MEEPQQPQRPARPLVGYRDVGEDVRHSHSAMTRAWLILAVLMALYLGWTLVVYFLEPGLR
Ga0247822_108052683	F001935	N/A	VYVRHVTSLQFLTYLSFFAVLLAAMFRFVPGRTPPTRDEPYSDEELHAHDRKAAKYFLAGGFFLVLGSLHMVLKNLPWVSEYLARTGDAGHLVRDLSNTHLM