Scaffold Ga0247611

Basic Information
Taxon OID	3300028591 Open in IMG/M
Scaffold ID	Ga0247611_10000331 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028591 Open in IMG/M

Scaffold ID

Ga0247611_10000331 Open in IMG/M

Source Dataset Name

Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	97588
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

97588

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (37.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

New Zealand: Palmerston North, Manawatu-Wanganui

Coordinates

Lat. (^o)

-40.3794

Long. (^o)

175.6106

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_1000033146	F072445	N/A	MATVTELVRQSNGRMHFIDYTSTYRDDNKEFLRGDMWEFKFLNNGPRIVYYPGDTIINARLNSVQVGIDSSVSGFEKRMRGNFVIRQQTGQNTSGQLTLSFVDREDQAISYFVDDWKQKIADRDTKYSFRKDDLVTDCELYLTNSSRLDVRTIHFYNCVIMDAPLDK
Ga0247611_1000033149	F071326	N/A	MSNAESMASKNLEKANKFYSIGMKNIKVQMKLMGTEFVVLRPKNDKWRNVFGGSYSSDTTLENDYEQFTTTLIINMNEMRDVWNRNRDTIESYTPDDSLQVGDELQYTRDKRTYRFKISMKQAYSEAAETLFAYTLSSIIETIEE
Ga0247611_1000033166	F051210	AGAAGG	MNYLEHMQSDEMMTALKNSSVSLDDARIRAREYAKMFSRNDEMKADIFGTNGANLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVSDMRNVIPNLGPDNYKDINSMGNFQLEVTVNGTNYSTLVGRKLIPGTIRVKVVDPVAGGKGNYELVDDGQGNFMAKAGVMVAGSLNYLNGKVDFTLASVPADNATSHAKASITIVGKEDVTGTPCNTTGSTNAHANDKRFLAKMQQLGLSTVPDMLVAEYNIAALGAMKKATGADMASFLFTKLRELYTKMINYKLVSTLVEGYNGNTMDDLDLSARGIGFDTTSTGAANNVTFTDYRSRVDLFDAYLINVETALAKRAVKGVTTTAYVAGTQAASQFQKGGIIGKFKRNEKMTYISDLLGWYDGIPVLRSDDIVEPIETTEDNKKYQKGVFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYLAPELVQKVEFTVGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247611_10000331

Overview

Ecosystem & Geography

Associated Families

Sequences