NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247818_10257106

Scaffold Ga0247818_10257106


Overview

Basic Information
Taxon OID3300028589 Open in IMG/M
Scaffold IDGa0247818_10257106 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1155
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063924Metagenome / Metatranscriptome129Y
F101641Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0247818_102571062F063924GGAGMVVGAPAESLRRTLQGVLRLTGLPAPSLYPRAVVRPAEGRIEIVFSGPQGSTQIDADLRLVEPTDDLEALQLDLLAKLQAQGYDTRWDRGGQGDPAA
Ga0247818_102571063F101641N/AMEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEHG

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