NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247828_10228959

Scaffold Ga0247828_10228959


Overview

Basic Information
Taxon OID3300028587 Open in IMG/M
Scaffold IDGa0247828_10228959 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009244Metagenome / Metatranscriptome321Y
F022450Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0247828_102289591F009244N/AMEVPRTRDRLDSCNRGPAWPCEPPLRLKKKEGSSYRPTGRREPVPADLAYGSLALAALEDQACRGEIIGLYEDAPSLGRFALPRAGWWRTAQRARLPLRPLSQSQITREEALKRQTWLRYRSWSRLPSGVRLSVLGAVPYGTSTVFSKVVPHCDAQELRHYLQQVMATFSTTGTKVVLVVDRSGIHRAHQLDTTLDH
Ga0247828_102289592F022450N/AMEGFWRVMKEAIGAGRCLPTLYELYQRTRQVLMALQEQPIY

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