Scaffold Ga0265798_11050851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265798_11050851

Scaffold Ga0265798_11050851

Overview

Basic Information
Taxon OID	3300028586 Open in IMG/M
Scaffold ID	Ga0265798_11050851 Open in IMG/M
Source Dataset Name	Plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	532
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7043	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003289	Metagenome / Metatranscriptome	495	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265798_110508511	F003289	N/A	MXGNIVTEVALQSNFGLGFNNMKSDVLIHLTQXQYXXXFXFSFLXAFYYLVILRVIRFRTLKFRPRLATTYRPHGKXGDLLICIIPISXCSNIITNSNLIMRMIEXQAETGLLTVRIRGKQXYXIYKFELKTFTDILTIPKNIGNNKXQISTPGDLQTADDYLHILQLRSQNK

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