Scaffold Ga0268360_1000005

Overview

Basic Information

• Taxon OID: 3300028582
• Scaffold ID: Ga0268360_1000005
• Source Dataset Name: Sewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 727323
• Total Scaffold Genes: 568
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 447 (78.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.82
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268360_1000005257	F030458	GAG	MPFQARITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA
Ga0268360_1000005258	F041367	N/A	VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGGSPLCA
Ga0268360_1000005259	F031889	AGGAG	MYGDIPAAGITIRVPNPPKTAQLRLPTNEEMLERLDQQRSIRRTIGRRKSQTEFVPNLKADLDLFSKIRLDEDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRVTLRTPFGETVHMVKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVDLYDSVVTKIEGYAASIKPADVPPHHKSAVVVELVQAIDDLDPALDPNS