Scaffold Ga0247840_10002982

Overview

Basic Information

• Taxon OID: 3300028581
• Scaffold ID: Ga0247840_10002982
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 29241
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F017088	Metagenome	242	Y
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247840_1000298226	F041560	AGGA	MLSILIADQPLDLSDDFSVSLNLKSPLFNDVGDYSYPFKVPTTARNKAILGWKNRIASSSRIYDTYEGSFRWNGIVLFKGQVRIKSAGEKTFEGILYINKGNFNYEVKDLMMNRVDLGLKEFASDQDAINYFNWSLTHFYPDVDFSMPKISNTDFFDPVATNPELMAYNYIFPDGWLHKTTSDGTQRTILVPFLYLKYVLNKLAENFGYRLEDEFFTSSTELSRLVIYHSVNLSEVIFGLQQLFYCRFVPKVKVSEFISGLEKWFNCSFHADSKQRVIRIVSNKNVLLHSELIEFSENILSISQEIPDEITGYRFMIGPDAGDKVYQAQLDAEKGITDYIRGAVGTFSDIPPYPFTWLGDIYYVVDTSTWWQLSVNPITFLIEWIQFPNGPVLTDKFFYKYGDEKNKFETIFSSLYDRFGIVSCGNLGTDKDKITPRLFWVGTTGGYGYPVELRGLADGGNFSLRYTGSHGMFNLFWKDWVDWIMNTRKNVKIEKQMDFIELKNIDFTKRYRINGINYLVNEISVTLNKSSIKSAQLRCFSCP
Ga0247840_1000298227	F040985	N/A	MIDITETPNLISFAGNPVIFEACSSDYLVSLGERSFFELVVSGIDTTTGHSFTMKFAGKTLVFKSAGITEFDGLLFEVAYYGQTFNDFANNIYQCFLQNYDIQKSFDVTLGQVGTSQRKITLAAKEAGDEYSVTLTNVGVTGVAQGTNTPGTDDVYRDFFSILCLIRDGYNYTIGEDLKPTDIMGGARFDISDYLRSKFAAWELTRFEFPELAGNVRVHGWDYLLKYRVSFAESIAGHVKGLYSTGWKYALAGGLNHELLTCLNENYLEYFAVEANKSKFLSWLPTTKYSRSGVMEKLFFLFQGNPDGIQYRLVVVVTFTDYTHKIINATPLVAYTPYCIAEFKVGFDHLNLVNAWYGKTVKTWEVMLMDSDDEYLSERRIYINDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERAAGITIREEKYSYFNSPARQFSAKETEICKANSGWISLGEKNCLRELLLSTEAYEQIGKELFQIVVKSAKITPFLKDCEYLFNLEIEYERAYENSFYSVHVPESSANPIIPPVALTWDNMDVSFDNIEITFDQVTF
Ga0247840_100029824	F017088	AGG	MSHTHYSGDPRQITARFPSTCHTCGKPIKKGETIIYWPNGKKAGHYNCDIQDYRQSIASFEDEDRYNNVYH
Ga0247840_100029825	F002824	N/A	MTKLTNTTLKPGNGKPNAEEMAIVKTILNPAENKTEEKKPVLQIEAEKPVIPAPEPKKEMTMMEKILKIENLQLVIEKRAKLVQTRSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIEFLKTSFDASITEAENKITF