Basic Information | |
---|---|
Taxon OID | 3300028581 Open in IMG/M |
Scaffold ID | Ga0247840_10000223 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 116909 |
Total Scaffold Genes | 123 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (29.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 17 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015835 | Metagenome / Metatranscriptome | 251 | Y |
F016120 | Metagenome / Metatranscriptome | 249 | Y |
F016250 | Metagenome / Metatranscriptome | 248 | Y |
F069739 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247840_1000022322 | F016120 | N/A | MSNNDNRPPTLDRQSIEEATTEAEARSLEYDPNVRARYIREMLRDIALWMAEGLPEDTIRQKVPDFIEKYPELFKKIINKQDLSPVQSMLAMLDRMGEGNISQHQASVIIGKKLVDRYVTPQLNGADAKK |
Ga0247840_1000022330 | F015835 | N/A | MADPGVGTLVRYYLHYSNLSQSFYKQYGAAKKVKDDYEKQIIGTLQQTGMEKATIQIGGGQLNVVDKREPNQLSLTTIEKLLHGYFKQSGGADKTLDILTFIRANRGYNMNKYIKQTGIPQPQQQLQ |
Ga0247840_1000022376 | F069739 | N/A | MSLDEQIFEPNVIIVGVFGSTNKVSEQDLQDNTLTLILQELGRMPDKILIPTEGNSSIYIDNWAEALHIKTQTFQADWVRNGKIAQIIRDDRIAKECTHALVFLGQKSTRLEKFAEKLCKKGKTVFTSSHNQTLSQFEMSRCEPSRPSKALTHAHKSSKGKEQTLLKFQKKEEC |
Ga0247840_1000022384 | F016250 | AGG | MSPINRLLLVIAVLFIAAVTYAFYYSSDLVKKNPFLDKNLLKRGMDKPTIWLYYDTSDVNSRQWLDFGARSSRALNMPFLNLCYETIVRQNKEDYRVEVIGGLTGVAELLGGWDQLPPGLRDPISPVNEAELNYIRAAILAKYGGLWLSPYCVSLKGFGKLPENKVVFFGTDLDETYAGPDGTNVPGFRAIWSPKPKHPMFEEWAQITYARVAQKRGGDQIRGDAKWDFVRLSTEYVNTGIVVDPAVEGMRKKDGKRIQLEDLLATGTDGNLPFDLCAYTVYVPFPWPELRDREIFGWFLRMSEDQIMGSDIAIKYLLEKGLR |
⦗Top⦘ |