Scaffold Ga0265318_10001250

Overview

Basic Information

• Taxon OID: 3300028577
• Scaffold ID: Ga0265318_10001250
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15408
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035981	Metagenome / Metatranscriptome	171	N
F084521	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265318_1000125021	F084521	GGAGG	MTGELVYSVEVAIVRCPGDGEGGANPGPVETPTAVRYCDVCRRWGASGTTHTCWRNWKPRLSDLLIEMTREGRRP
Ga0265318_100012508	F035981	GAGG	MNNDDSSGADEILGADEILGADEILAGEEILAGDDSAGDESSGDEVGLRLFRRRKKGAPKKLDPIVQNRLTQQGVIVKSAAYSKGRSQSLGFEFLAVQPGATVDVTANPQVLFKPKRLVYTGPANTFVIQDAKIGRSSQFVASGPQAADAYPPTSTVDNMELDTARPGVVITLRMQNVGGVAADFRATMFGLVAE