Scaffold Ga0247843_1024464

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1024464
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4509
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F016125	Metagenome	249	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_10244645	F014606	N/A	MSTRTNIRNATANALTGALVVPTANILRGRNNTIASVSFPSAAVYAVSEQIEVRTLGPSNRTQYRQLQLVVDYFIAESGTYLIDDLFDTGSAAVEAAVLADVTLGGVCQDTHLTAVDYVIEPDEDRRFGSARHTFNCIYFSTD
Ga0247843_10244646	F100667	AGG	MISIFSDTKKLEYALARLADAAKVDLGLVIKQEGAYVARTIMLITPPTGDKLAKGSQTQIPIVTGGTITKTKAGGLSTNAKEQGENAILGDLFGGRQLAKEKSIGLFQKIGNSTEVPPRDGQHETMGVNLGWENSKNIRIFRKFWQPGASIAQMRAFHYANRNERGRPKQVSRSLIGRWQVQDQMWISNQAADAYLKHVQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGTAQVQFGQNPFVSARTTGNKIPDLQRVVDSALKIRYKVTLSKVRALIANRAVNLGFAKVKGGMVIPKEA
Ga0247843_10244647	F016125	N/A	MAAVRDFDPAQINSDFSAILAQAGISFTYQSVAVTGIWSAASNAFADFEDQRRNESKFTVFLLTSSVSAVPQVTQTLSRAGITYYIERVTLDAEGAGCEIGVSKVI