Scaffold Ga0247843_1002066

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1002066
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 38063
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (10.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050308	Metagenome	145	Y
F061576	Metagenome	131	Y
F067450	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_100206615	F061576	AGAAG	MQTESKWVRKLILSGQPDNIELGLILNNSFNLFPLTRKFYRKNKRFKFWHTSRKYSVIESESRYYAKVALLNNELKTHRCYFWLDFQEPKFKTPWEQWQKHITNCAKWPYQGPLSNYGAHPYTAMFTKP
Ga0247843_100206620	F050308	AGG	LITREYAEFIAMRFDSLDAYKIAYGESVNRAVECDALLYNAESVILAMKVQHQTQSDMLLLKEAVIKSHERDVIICNDYKKQLKKQTRIKKVWKITTYAFITVSFGLLTYSILK
Ga0247843_100206640	F067450	N/A	MISLIILIPIAACAIVFLHYCIGSPIQGEYYTGRIFSAYGAFISKLYLDFEQKEKQRVWAKYNAWKQQRDKELNEELQNKTANEADTIYKEYLQHVEMTYNDTENNMKNNPWSMAGACPICFGTWVSLFTFTFFIIFVPLPWWYIFIGTPAAVIVSRYIKLS