Scaffold Ga0302144_10006131

Overview

Basic Information

• Taxon OID: 3300028560
• Scaffold ID: Ga0302144_10006131
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4012
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037688	Metagenome	167	N
F039069	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302144_100061311	F037688	GGA	MFRRSLLILLLFSASLAVVAYPATAQLHHRHPMARSWVPGSNIRPHPVGKPKDPDVPWWIPLIEAIPTLLFMFGAVPGIIASSKGIPHWKSYFWRGLFFGFLFFPIVMVLIYQVLKYEHPAITNQALIRPPNIVVPQPARSDGIHTPAAIPPLISFQAENDP
Ga0302144_100061314	F039069	GGAG	MSTSLSRTPFGPMSLYPICAADSLNAISRRSSRWQVLEAFLLSSEGRAERVYEGGSGLLILMAIPGQPGTGAFYIYDEIRRAFSMVTFADQDTFHSSMFDYVVHSYDLGRFVELPKLTLASKPVPQAVKGGSGIVEKGNNLNYNSNRRRSNRYRGPRVPQAVVNAAGETHMGLVTA