Scaffold Ga0137415_10078946

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10078946
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3151
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F050281	Metagenome	145	Y
F078992	Metagenome	116	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_100789462	F050281	GGA	MIYQRQFPSKKKEKIARAKNALGRLRANPRDAVAVMEFYETCGRDLQEVAVRYFGKNQLGKKAVLNLLAAVVSGARTYDPQSMNASEWISRVAEVEARRLRKTLDATGSPGRRIRRAM
Ga0137415_100789463	F000528	N/A	MGEWKAQISVRVRQALRSELEEFAAREKRKLGNLGEVILEWAFEQLKVAGSTERLLRYKIRLPESALTGRKLHK
Ga0137415_100789464	F091706	AGGA	MKADGYSKMFLWNRNADRLIRVLQRMESIGILSKQDMKIYEVQLEEVRAALNAHFSGAMATRERDDHSRFKRQRTAWENTSRKPNRK
Ga0137415_100789466	F078992	GGAGG	MDGQAIRKQEVGPIKATSGDPYNKTVEESKLNSSARQDCRKFEVSCHAGNAGHLEVASDVVSVKIGQQIRREGKDEFWGSLLVECKEQDDGSLVVEVVVFHPDWDEPLRIASIQSNPSDKNTPEPAIHCDFEQKRL