Scaffold Ga0137415_10002540

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10002540
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18168
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020655	Metagenome	222	Y
F032220	Metagenome / Metatranscriptome	180	N
F039066	Metagenome	164	Y
F041122	Metagenome	160	N
F056479	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000254011	F039066	GAGG	VNARIFALIVAIIGMLVASGIPASNGRGAPLPTLSVISPTPNVVIGNGTPVAVVFAVTNFNLTEPGNGTSSPNSGHVDVLVDDMLTAKASVNTIVLALPSGPHTIRLRLVTDNGSALNPDVTASVAVMVTRGPASGTPGLSIVFPREGALVGTDSTLSFRVTNFVLVAPGGPAGVPNEGHILARLDNAPYAVLTHDAPLHLNLKDGPHTVTLQLVDNEGGPLNPNVTASLHVTVQALLGRVTPFDATPYLALVNLLIGLGVLAALYRKLEAR
Ga0137415_1000254012	F041122	GGAGG	VRPQAPTARQHPEARRRSTMLALVALMSLLGVSLSSSTAVAAAPSLTIVSPANGAVIANGTSVLVDFLVSNFAFVQPGRVGQIGSPNEGHANVFLDTQYIRLLTAVEPFSLPVTSGAHTIRIQLVADNGTLLNPDVSASVGVVATHGPDEGAPRLKILSPTPLEATGHGIYVSYRIENFTLVEPRGQPNAPSEGHVQLLVGTDVVMEVIQYEPVLLVSLPEGDITIGARLVNNDDTVLANPSASATVAIHVVASSSVSLPLVSNGGIALLLAFILVVLILRRRKLAARDANARGGSP
Ga0137415_1000254013	F020655	N/A	MRTAALALAGVLIVLVFGLSMPGVRAAGPTLTIVSPADHVVIGNGTSVAVIFVVSDFNLTPPGTGGPGPSPTEGHVDVYVDGVLTIAVSQETIDLSLASGTYTILLRLVSDNGTALSPDVTSSITVTVTQGPAVGTPRIQISYVEITYPTPGLVLGRDVTISFRVTDFALVPPGRGEPVPNEGHVAVFLDGVYYMSVMAFRPIPFSDLVDGEHTVTVRLVDDAGQALTPDASDSVTFRIQFAAIVDINPYLSITQIVLAGAIFIVLFYRQRGGNLLKILSARFGGKNA
Ga0137415_100025406	F032220	N/A	MSVTASTPIDLSSVVESQQPLEAVLLITRTGAQLGAWTRNSVPVDVLSVMSATLVGSVETLMTALGASSPREVSLMIDGRRVFVSKVNAQVVLVIVAAGGMTEVALRATMRQIVKSLPPFPSDSDSMTRGARDRRRS
Ga0137415_100025408	F056479	GGCGG	MSREILIASVSLPPFVGTIEGWEFPWMKPTVSTGPMSESELVRQQGGWVFAGSISNSILGFAFWALAAHLFTSSAVGITGSLVNLSSLATSIGILGLDNGLVRFIARVDRPRALMWQVLLVGGGLSSVMGIVLSTVILRVSNAAAAQEFAVLVVLSVALTTSQTCFQITDGSILAARKSEYLAYRAVAYGLAKIALLFTVAAAGVVGLLGSYTLPLLAITVVSLFLVWRVWPARNENGIPTRIRDLSSLSFGNWIHGFTYSLPSRLGPSILLIFVGPSPVAYFFIALQLAEVLNYIPESVSKSLFAHGSLRDRLPTSLASSMRRLLAVIMVPMVGLGVVLAYIGMTIVGGTSYGAHGLALQLFLLATLPKAGIQLYKAQFNVDRRPLALIVMGSTLGLSTLAFLVIGLALRVDPDWLPLSWILGGVLALGVGWWLSRRRALGGPETPAGAG