Scaffold Ga0189899_107024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0189899_107024

Scaffold Ga0189899_107024

Overview

Basic Information
Taxon OID	3300028445 Open in IMG/M
Scaffold ID	Ga0189899_107024 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome) (v2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	572
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011567	Metagenome / Metatranscriptome	289	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0189899_1070242	F011567	GAGG	LRLDPVTGSTLLAYIFKAILKPTPQPVRLQTPVPVRPFYCRARYDPRLKPVAEAKLPDFLPVFEPPLPSRTFLSFGIKALNPTPFRSACLGESPDLPSLPVSRKCLTIAARRINVPDPLLPVRLTV

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