NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306866_1007945

Scaffold Ga0306866_1007945


Overview

Basic Information
Taxon OID3300028410 Open in IMG/M
Scaffold IDGa0306866_1007945 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1951
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F001814Metagenome630Y

Sequences

Protein IDFamilyRBSSequence
Ga0306866_10079452F001814GAGMSINQHKDYSKPYWVAKYEDNSVIKYGEISEGSILNTKMEIFTFSEKEDMILFVIDSGGTYTDDEI
Ga0306866_10079453F001408N/AMKNKIKDYFKRTRHHLHAGVGIPAGFLASLSLSWVWLGFRNLDALDKAMWFLAPAFVIGYAWERYQGKINKMDILVSGIAISTGVYLGGLVFNWLIN

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