NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306866_1000144

Scaffold Ga0306866_1000144


Overview

Basic Information
Taxon OID3300028410 Open in IMG/M
Scaffold IDGa0306866_1000144 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28210
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (90.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003151Metagenome504Y
F004320Metagenome443Y
F004364Metagenome441Y
F009587Metagenome315N
F027419Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0306866_100014413F004320AGGAGMPKRVRMSPEGRREVILRAAIALTREADGCLDSWSRQDVANKCVPPTSPETVKHYYLMPDLRAAVRVLLDK
Ga0306866_100014426F003151GGAGMTQFQPGDRVTHNPTGEEWILVAVYGSYVKPGGWPESRALAGDCTLICGCTTTDEREACTRACDAVVL
Ga0306866_100014429F004364N/AMNHTERPCAAAGLTSYRYGNIMIGATSTQDALNEADRSLTRGVATVDRLEIWNALTGLYEKVTT
Ga0306866_100014433F009587N/AMTHLHQLCHNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPRPMPEQIDAALEWAREHLLTR
Ga0306866_100014438F027419GGAGGMSLTDWQARWGHHVPAQALAELTAILSPVMPLPAPTARHSEAAGAAQIRLAAGRAGVPPR

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