Scaffold Ga0306866_1000144

Overview

Basic Information

• Taxon OID: 3300028410
• Scaffold ID: Ga0306866_1000144
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28210
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003151	Metagenome	504	Y
F004320	Metagenome	443	Y
F004364	Metagenome	441	Y
F009587	Metagenome	315	N
F027419	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306866_100014413	F004320	AGGAG	MPKRVRMSPEGRREVILRAAIALTREADGCLDSWSRQDVANKCVPPTSPETVKHYYLMPDLRAAVRVLLDK
Ga0306866_100014426	F003151	GGAG	MTQFQPGDRVTHNPTGEEWILVAVYGSYVKPGGWPESRALAGDCTLICGCTTTDEREACTRACDAVVL
Ga0306866_100014429	F004364	N/A	MNHTERPCAAAGLTSYRYGNIMIGATSTQDALNEADRSLTRGVATVDRLEIWNALTGLYEKVTT
Ga0306866_100014433	F009587	N/A	MTHLHQLCHNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPRPMPEQIDAALEWAREHLLTR
Ga0306866_100014438	F027419	GGAGG	MSLTDWQARWGHHVPAQALAELTAILSPVMPLPAPTARHSEAAGAAQIRLAAGRAGVPPR