NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306913_114390

Scaffold Ga0306913_114390


Overview

Basic Information
Taxon OID3300028407 Open in IMG/M
Scaffold IDGa0306913_114390 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome #680 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5602Long. (o)78.1968Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F066289Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0306913_1143901F006455N/ATGIQPMNQQVKSPAGWTEIEPEFDHQRQTFQRRRDGLVVSMEQELPHAAYNIVTLPENYHEDNQIIDCIELDVEPEDAAETAREWMEQNNRQ
Ga0306913_1143902F066289GGAMSDEIIVSSTEALYDDYADLKLQKSSGYAPCGLAGIVVNDGDIICGNCATDEELADYDNGSIFANSEWDYPAPLCEDCQKPLNVD

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