NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1109916

Scaffold Ga0304730_1109916


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1109916 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020540Metagenome / Metatranscriptome223Y
F021534Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_11099162F021534N/AMQSVVSSWENQMKSQTENEIIHFLKELLHPEGFGWAVTSEISRESKRLLIMIESESSNEQDSTIRQTA
Ga0304730_11099163F020540N/AMSKIQQFGRPHETFDPGNKKHRKIFHDVMQYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGRYYMEKEFGQLHNDDPFVSGETIRDRPNPHPYIYTRKSTIA

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